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Meeting Activities

File Application of Predictive Tools to Environmental Assessment and Remediation
Barry Hardy (Douglas Connect, Switzerland) Asish Mohapatra (Health Canada) OpenTox USA 2013 InterAction Meeting Hamner Conference Center, Raleigh-Durham, North Carolina, USA •Background on Risk Management of Contaminated Sites •Remediation Exposure Checklist Tool •Contaminated Site Remediation Measures •Chemicals of interest •Information Gathering Predictive Toxicology Tools •Searching for Data •Modeling Hazard and Risk •Using in vitro data •Biokinetics •Environmental Exposure •Mode-of-Action and Pathways •Toxicity Values •Application to Risk Assessment and Management •Conclusions
File Evidence-based toxicology - the toolbox for quality assurance of Tox-21c tools
Dr. rer. hum. biol. André Kleensang, Dr. rer. nat. Dr. med. Thomas Hartung. Center for Alternatives to Animal Testing (CAAT) Bloomberg School of Public Health, Johns Hopkins University, Baltimore, US • Who is the Johns Hopkins Center for Alternatives to Animal Testing? • The Key Driving Force: Toxicity Testing in the 21th Century: A Vision and Strategy • The Concept: Pathways of Toxicity & Adverse Outcome Pathways • The Vision: We need Systems Toxicology, Evidence-Based Toxicology, Integrated Testing Strategies and “Fit-for-purpose” validation and regulatory acceptance for Tox-21c
File Integrated Analysis of Toxicology Data supported by ToxBank
OpenTox Euro 2013 Meeting Mainz, Germany October 1, 2013 Barry.Hardy –(at)-
File Phenotype Database
Jildau Bouwman Nutritional Phenotype Database
File Chemical decision support in toxicology and pharmacology
Ola Spjuth
File A Toxicological Ontology facilitates experimental databases mapping on the OECD Harmonised Templates’ standard format
Olga Tcheremenskaia, Romualdo Benigni, Monika Batke, George Fotakis and Joop Deknecht
File ToxML: Community Based Development of a Common Data Exchange Standard for Toxicology
Mohammed Ali and Philip Judson
File Visual Analysis of Chemical Space with Scaffold Hunter
Nils Kriege
File AMBIT Web services : chemical data and models via OpenTox API
Nina Jeliazkova
File lazar: a modular predictive toxicology framework
Martin Gütlein, David Vorgrimmler, Micha Rautenberg, Denis Gebele and Christoph Helma
File Assessing compound carcinogenicity in vitro using connectivity mapping
Florian Caiment
File Fractional-Order Pharmacokinetics and Control
Pantelis Sopasakis and Haralambos Sarimveis
File PathVisio 3: new features for pathway analysis and visualization
Martina Kutmon, Martijn P van Iersel, Thomas Kelder, Anwesha Bohler and Chris T. Evelo
File The ChEMBL Database: Open data for use in Toxicity Prediction
Anne Hersey
File Ambit-TAUTOMER – a Software Tool for Automatic Tautomer Generation
Nikolay Kochev, Vesselina Paskaleva and Nina Jeliazkova
File InCroMAP – a tool for the integrated analysis and pathway-centered visualization of cross-omics datasets
Johannes Eichner, Clemens Wrzodek, Finja Büchel, Lars Rosenbaum and Andreas Zell
File The Systems Biology Simulation Core Library: A numerical method for the quantitative simulation of biochemical reaction networks
Roland Keller, Alexander Dörr, Andreas Zell and Andreas Dräger
File Reaction Representation and Structure Transformation with Ambit-SMIRKS. Application in Metabolite prediction
Nina Jeliazkova, Nikolay Kochev, Patrik Rydberg and Svetlana Avramova
File The ISA infrastructure: from experimental planning to data publication
Alejandra Gonzalez-Beltran, Eamonn Maguire, Philippe Rocca-Serra and Susanna-Assunta Sansone
File CheS-Mapper: New Developments
Martin Gütlein, Andreas Karwath and Stefan Kramer
File The Open Pharmacological Triple Store Concepts
Egon Willighagen
File From bench to FDA: validation of in vitro methods
Katherine Tsaioun and Katya Tsaioun
File The NTP DrugMatrix Database
Scott Auerbach
File Supporting an integrated data analysis across SEURAT-1 through the ToxBank data warehouse
Glenn Myatt, Barry Hardy, Christoph Helma, Nina Jeliazkova, Pekka Kohonen and Scott Miller
File In Vitro to In Vivo Extrapolation in Predictive Toxicology
Harvey Clewell
File High Throughput Human Exposure Forecasts for Environmental Chemical Risk
John Wambaugh
File OpenTox - Development of Open Standards, Open Source and Open Data supporting Predictive Toxicology
Barry Hardy
File The CEBS Database: a structure for data integration across studies
Asif Rashid and Jennifer Fostel
File Overview of NTP Office of Health Assessment and Translation (OHAT) Implementation of Systematic Review
Kristina Thayer, Andrew Rooney, Abee Boyles, Mary Wolfe, Vickie Walker, Stephanie Holmgren, Kembra Howdeshell, Kyla Taylor and Mike Shelby
File HAWC (Health Assessment Workspace Collaborative): a modular web-based interface to facilitate development of human health assessments of chemicals
Andy Shapiro, Ivan Rusyn and Kate Guyton
File Multiscale Data Integration and Modeling
Thomas Knudsen
File In Silico Models for Screening New Drugs for QT Prolongation Potential using Human Clinical Trial Data
Luis Valerio and Kevin Cross
File The (U.S.) National Library of Medicine: Collecting, Organizing, and Disseminating Information in Toxicology, Exposure Science, and Risk Assessment
Pertti Hakkinen
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