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- Info
Meeting Activities
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Application of Predictive Tools to Environmental Assessment and Remediation
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Barry Hardy (Douglas Connect, Switzerland) Asish Mohapatra (Health Canada) OpenTox USA 2013 InterAction Meeting Hamner Conference Center, Raleigh-Durham, North Carolina, USA
•Background on Risk Management of Contaminated Sites
•Remediation Exposure Checklist Tool
•Contaminated Site Remediation Measures
•Chemicals of interest
•Information Gathering Predictive Toxicology Tools
•Searching for Data
•Modeling Hazard and Risk
•Using in vitro data
•Biokinetics
•Environmental Exposure
•Mode-of-Action and Pathways
•Toxicity Values
•Application to Risk Assessment and Management
•Conclusions
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Evidence-based toxicology - the toolbox for quality assurance of Tox-21c tools
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Dr. rer. hum. biol. André Kleensang, Dr. rer. nat. Dr. med. Thomas Hartung.
Center for Alternatives to Animal Testing (CAAT) Bloomberg School of Public Health, Johns Hopkins University, Baltimore, US
• Who is the Johns Hopkins Center for Alternatives to Animal Testing?
• The Key Driving Force: Toxicity Testing in the 21th Century:
A Vision and Strategy
• The Concept: Pathways of Toxicity & Adverse Outcome Pathways
• The Vision: We need Systems Toxicology, Evidence-Based
Toxicology, Integrated Testing Strategies and “Fit-for-purpose”
validation and regulatory acceptance for Tox-21c
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Integrated Analysis of Toxicology Data supported by ToxBank
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OpenTox Euro 2013 Meeting Mainz, Germany October 1, 2013
Barry.Hardy –(at)- douglasconnect.com
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Phenotype Database
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Jildau Bouwman
Nutritional Phenotype Database
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Chemical decision support in toxicology and pharmacology
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Ola Spjuth
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A Toxicological Ontology facilitates experimental databases mapping on the OECD Harmonised Templates’ standard format
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Olga Tcheremenskaia, Romualdo Benigni, Monika Batke, George Fotakis and Joop Deknecht
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ToxML: Community Based Development of a Common Data Exchange Standard for Toxicology
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Mohammed Ali and Philip Judson
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Visual Analysis of Chemical Space with Scaffold Hunter
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Nils Kriege
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AMBIT Web services : chemical data and models via OpenTox API
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Nina Jeliazkova
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lazar: a modular predictive toxicology framework
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Martin Gütlein, David Vorgrimmler, Micha Rautenberg, Denis Gebele and Christoph Helma
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Assessing compound carcinogenicity in vitro using connectivity mapping
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Florian Caiment
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Fractional-Order Pharmacokinetics and Control
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Pantelis Sopasakis and Haralambos Sarimveis
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PathVisio 3: new features for pathway analysis and visualization
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Martina Kutmon, Martijn P van Iersel, Thomas Kelder, Anwesha Bohler and Chris T. Evelo
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The ChEMBL Database: Open data for use in Toxicity Prediction
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Anne Hersey
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Ambit-TAUTOMER – a Software Tool for Automatic Tautomer Generation
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Nikolay Kochev, Vesselina Paskaleva and Nina Jeliazkova
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InCroMAP – a tool for the integrated analysis and pathway-centered visualization of cross-omics datasets
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Johannes Eichner, Clemens Wrzodek, Finja Büchel, Lars Rosenbaum and Andreas Zell
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The Systems Biology Simulation Core Library: A numerical method for the quantitative simulation of biochemical reaction networks
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Roland Keller, Alexander Dörr, Andreas Zell and Andreas Dräger
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Reaction Representation and Structure Transformation with Ambit-SMIRKS. Application in Metabolite prediction
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Nina Jeliazkova, Nikolay Kochev, Patrik Rydberg and Svetlana Avramova
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The ISA infrastructure: from experimental planning to data publication
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Alejandra Gonzalez-Beltran, Eamonn Maguire, Philippe Rocca-Serra and Susanna-Assunta Sansone
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CheS-Mapper: New Developments
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Martin Gütlein, Andreas Karwath and Stefan Kramer
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The Open Pharmacological Triple Store Concepts
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Egon Willighagen
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From bench to FDA: validation of in vitro methods
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Katherine Tsaioun and Katya Tsaioun
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The NTP DrugMatrix Database
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Scott Auerbach
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Supporting an integrated data analysis across SEURAT-1 through the ToxBank data warehouse
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Glenn Myatt, Barry Hardy, Christoph Helma, Nina Jeliazkova, Pekka Kohonen and Scott Miller
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In Vitro to In Vivo Extrapolation in Predictive Toxicology
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Harvey Clewell
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High Throughput Human Exposure Forecasts for Environmental Chemical Risk
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John Wambaugh
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OpenTox - Development of Open Standards, Open Source and Open Data supporting Predictive Toxicology
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Barry Hardy
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The CEBS Database: a structure for data integration across studies
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Asif Rashid and Jennifer Fostel
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Overview of NTP Office of Health Assessment and Translation (OHAT) Implementation of Systematic Review
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Kristina Thayer, Andrew Rooney, Abee Boyles, Mary Wolfe, Vickie Walker, Stephanie Holmgren, Kembra Howdeshell, Kyla Taylor and Mike Shelby
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HAWC (Health Assessment Workspace Collaborative): a modular web-based interface to facilitate development of human health assessments of chemicals
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Andy Shapiro, Ivan Rusyn and Kate Guyton
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Multiscale Data Integration and Modeling
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Thomas Knudsen
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In Silico Models for Screening New Drugs for QT Prolongation Potential using Human Clinical Trial Data
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Luis Valerio and Kevin Cross
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The (U.S.) National Library of Medicine: Collecting, Organizing, and Disseminating Information in Toxicology, Exposure Science, and Risk Assessment
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Pertti Hakkinen
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