Sections
You are here: Home » Tutorials » Drug Discovery III » 9. Additional steps IV) Downloading data from other dataset services in OpenTox

9. Additional steps IV) Downloading data from other dataset services in OpenTox

You may have noticed in ToxPredict's list of Models that there are models outside of Ambit2. For example:

IST Salmonella Mutagenicitx model (SAL): http://toxcreate3.in-silico.ch/model/7655

To apply this model to our dataset in a way we can subsequently download the data, use the superservice in Ambit2 (http://apps.ideaconsult.net:8080/ambit2/algorithm/superservice) as described in "6. Additional steps I) Applying an individual model to a dataset" in this tutorial. Simply use the above model URIs for the IST models. Once the task is completed, the "Apply Calls a remote service" link will point you to a dataset at http://toxcreate3.in-silico.ch/dataset/. Navigate to this dataset. 

Once you pointed your browser to the created dataset (e.g. http://toxcreate3.in-silico.ch/dataset/30891), append ?media=text/csv to the URL (in this example, the URL would be http://toxcreate3.in-silico.ch/dataset/30891?media=text/csv) to download a CSV file of the prediction data to be combined with the other files you have downloaded earlier.

 

Back to Overview

Next Step: 10. Complement your findings with predicted associations with hepatobiliary adverse events

Document Actions