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Knowledge Fair Table C - Build a Model Based on In-Vitro Data

Posted by Maunz Andreas at Sep 13, 2010 03:15 PM |

Summary: In this workshop, you will build a predictive model based on in-vitro data using OpenTox web services using a Graphical User Interface (GUI) and via the command line. Several models can be built and inspected.


Learn to handle searching facilities, data representation, and API of the OpenTox framework, specifically in the context of in-vitro data.


1.    Inspect data from US EPA's Toxcast Program.
2.    Select in vitro assays based on correlation to an in-vivo endpoint.
3.    Use the ToxCreate webapplication to create a model

a.    Fill the data into an Excel Sheet
b.    Create the model
c.    Make a prediction

4.    Create a model using the Opentox API

a.    Locate data on the ambit webservice.
b.    Create a model on the command line using curl.
c.    Make a prediction.


Necessary Software and Data Files:

Please download and install the following software, if you bring your laptop:

Please download the following data fiiles:

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