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Knowledge Fair Table C - Build a Model Based on In-Vitro Data

Posted by Maunz Andreas at Sep 13, 2010 04:15 PM |

Summary: In this workshop, you will build a predictive model based on in-vitro data using OpenTox web services using a Graphical User Interface (GUI) and via the command line. Several models can be built and inspected.

Objective:

Learn to handle searching facilities, data representation, and API of the OpenTox framework, specifically in the context of in-vitro data.

Steps:

1.    Inspect data from US EPA's Toxcast Program.
2.    Select in vitro assays based on correlation to an in-vivo endpoint.
3.    Use the ToxCreate webapplication to create a model

a.    Fill the data into an Excel Sheet
b.    Create the model
c.    Make a prediction

4.    Create a model using the Opentox API

a.    Locate data on the ambit webservice.
b.    Create a model on the command line using curl.
c.    Make a prediction.

 

Necessary Software and Data Files:

Please download and install the following software, if you bring your laptop:

Please download the following data fiiles:

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